All modules for which code is available
- pyqmmm.md.amber_toolkit
- pyqmmm.md.cc_coupling
- pyqmmm.md.cluster_frame_indexer
- pyqmmm.md.compare_distances
- pyqmmm.md.dccm_plot_formator
- pyqmmm.md.dssp_plotter
- pyqmmm.md.edia_chain_calculator
- pyqmmm.md.gbsa_analyzer
- pyqmmm.md.hbond_analyzer
- pyqmmm.md.hbond_compare
- pyqmmm.md.md_vitals_plotter
- pyqmmm.md.pdb_ensemble_generator
- pyqmmm.md.residue_lister
- pyqmmm.md.restraint_plotter
- pyqmmm.md.rmsd_clusters_colorcoder
- pyqmmm.md.rmsd_plotter
- pyqmmm.md.rmsf_plotter
- pyqmmm.qm.bond_valence
- pyqmmm.qm.charge_spin_extractor
- pyqmmm.qm.combine_nebs
- pyqmmm.qm.create_mep_trj
- pyqmmm.qm.eda_analyze
- pyqmmm.qm.energy_plotly
- pyqmmm.qm.energy_plotter
- pyqmmm.qm.extract_electronic_energies
- pyqmmm.qm.extract_gibbs_free_energies
- pyqmmm.qm.hydrogen_atom_optimizer
- pyqmmm.qm.mechanism_plotter
- pyqmmm.qm.missing_frame_checkup
- pyqmmm.qm.neb_doubler
- pyqmmm.qm.orca_clean_irc
- pyqmmm.qm.orca_neb_restart
- pyqmmm.qm.orca_scan_plotter
- pyqmmm.qm.pdb_residue_extractor
- pyqmmm.qm.pes_organizer
- pyqmmm.qm.plot_combined_nebs
- pyqmmm.qm.qtaim_analyzer
- pyqmmm.qm.reaction_coordinate_collector
- pyqmmm.qm.res_name_format_extractor
- pyqmmm.qm.residue_decomposition
- pyqmmm.qm.residue_numerator
- pyqmmm.qm.single-eda-analyze
- pyqmmm.qm.traj_atom_filter
- pyqmmm.qm.traj_atom_swapper
- pyqmmm.qm.traj_movie_generator
- pyqmmm.qm.xyz_flipper