API Reference

This page contains auto-generated API reference documentation [1].

• pyqmmm
  • pyqmmm.md
    • pyqmmm.md.amber_toolkit
    • pyqmmm.md.cc_coupling
    • pyqmmm.md.cluster_frame_indexer
    • pyqmmm.md.compare_distances
    • pyqmmm.md.dccm_plot_formator
    • pyqmmm.md.dssp_plotter
    • pyqmmm.md.edia_chain_calculator
    • pyqmmm.md.gbsa_analyzer
    • pyqmmm.md.hbond_analyzer
    • pyqmmm.md.hbond_compare
    • pyqmmm.md.md_vitals_plotter
    • pyqmmm.md.pdb_ensemble_generator
    • pyqmmm.md.residue_lister
    • pyqmmm.md.restraint_plotter
    • pyqmmm.md.rmsd_clusters_colorcoder
    • pyqmmm.md.rmsd_plotter
    • pyqmmm.md.rmsf_calculator
    • pyqmmm.md.rmsf_plotter
  • pyqmmm.qm
    • pyqmmm.qm.bond_valence
    • pyqmmm.qm.charge_spin_extractor
    • pyqmmm.qm.combine_nebs
    • pyqmmm.qm.create_mep_trj
    • pyqmmm.qm.eda_analyze
    • pyqmmm.qm.energy_plotly
    • pyqmmm.qm.energy_plotter
    • pyqmmm.qm.extract_electronic_energies
    • pyqmmm.qm.extract_gibbs_free_energies
    • pyqmmm.qm.hydrogen_atom_optimizer
    • pyqmmm.qm.mechanism_plotter
    • pyqmmm.qm.missing_frame_checkup
    • pyqmmm.qm.neb_doubler
    • pyqmmm.qm.orca_clean_irc
    • pyqmmm.qm.orca_neb_restart
    • pyqmmm.qm.orca_scan_plotter
    • pyqmmm.qm.pdb_residue_extractor
    • pyqmmm.qm.pes_organizer
    • pyqmmm.qm.plot_combined_nebs
    • pyqmmm.qm.qtaim_analyzer
    • pyqmmm.qm.reaction_coordinate_collector
    • pyqmmm.qm.replace_pdb
    • pyqmmm.qm.res_name_format_extractor
    • pyqmmm.qm.residue_decomposition
    • pyqmmm.qm.residue_numerator
    • pyqmmm.qm.traj_atom_filter
    • pyqmmm.qm.traj_atom_swapper
    • pyqmmm.qm.traj_merger
    • pyqmmm.qm.traj_movie_generator
    • pyqmmm.qm.xyz_flipper
  • pyqmmm.cli
• quickcsa
• bfactor_csv
• bfactor_chg
• xyz2pdb
• repo2markdown
• delete_xyz_trj_atoms
• delete_pdb_trj_atoms
• ppm2png_converter
• submit_clustering
• translate_pdb_to_center

[1]

Created with sphinx-autoapi