pyqmmm.md.cc_coupling

Module Contents

Functions

format_plot(→ None)	General plotting parameters for the Kulik Lab.
heatmap(→ None)	Generates formatted heat maps.

pyqmmm.md.cc_coupling.format_plot() → None

General plotting parameters for the Kulik Lab.

pyqmmm.md.cc_coupling.heatmap(data: str, delete: List[int] = [], out_file: str = 'heatmap', v=[-0.4, 0.4]) → None

Generates formatted heat maps. Uses the Kulik Lab figure formatting standards. :param data: The name of the data file, which can be a data or a dat file. :type data: str :param delete: A list of the amino acids you would like removed indexed at zero. :type delete: List[int] :param out_file: The name you would like the image saved as. :type out_file: str