pyqmmm¶
Python package for working with multiscale simulation data.
Subpackages¶
pyqmmm.mdpyqmmm.md.amber_toolkitpyqmmm.md.cc_couplingpyqmmm.md.cluster_frame_indexerpyqmmm.md.compare_distancespyqmmm.md.dccm_plot_formatorpyqmmm.md.dssp_plotterpyqmmm.md.edia_chain_calculatorpyqmmm.md.gbsa_analyzerpyqmmm.md.hbond_analyzerpyqmmm.md.hbond_comparepyqmmm.md.md_vitals_plotterpyqmmm.md.pdb_ensemble_generatorpyqmmm.md.residue_listerpyqmmm.md.restraint_plotterpyqmmm.md.rmsd_clusters_colorcoderpyqmmm.md.rmsd_plotterpyqmmm.md.rmsf_calculatorpyqmmm.md.rmsf_plotter
pyqmmm.qmpyqmmm.qm.bond_valencepyqmmm.qm.charge_spin_extractorpyqmmm.qm.combine_nebspyqmmm.qm.create_mep_trjpyqmmm.qm.eda_analyzepyqmmm.qm.energy_plotlypyqmmm.qm.energy_plotterpyqmmm.qm.extract_electronic_energiespyqmmm.qm.extract_gibbs_free_energiespyqmmm.qm.hydrogen_atom_optimizerpyqmmm.qm.mechanism_plotterpyqmmm.qm.missing_frame_checkuppyqmmm.qm.neb_doublerpyqmmm.qm.orca_clean_ircpyqmmm.qm.orca_neb_restartpyqmmm.qm.orca_scan_plotterpyqmmm.qm.pdb_residue_extractorpyqmmm.qm.pes_organizerpyqmmm.qm.plot_combined_nebspyqmmm.qm.qtaim_analyzerpyqmmm.qm.reaction_coordinate_collectorpyqmmm.qm.replace_pdbpyqmmm.qm.res_name_format_extractorpyqmmm.qm.residue_decompositionpyqmmm.qm.residue_numeratorpyqmmm.qm.traj_atom_filterpyqmmm.qm.traj_atom_swapperpyqmmm.qm.traj_mergerpyqmmm.qm.traj_movie_generatorpyqmmm.qm.xyz_flipper